If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ), 'gf_id' => 'HOM05D000886', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000886' ), 'data_identifier' => 'HOM05D000886', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000886', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '676', 'num_species' => '95' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A09p54320' => 'bna', 'A10p01400' => 'bna', 'Aa31LG10G16260' => 'aar', 'Aa31LG4G16820' => 'aar', 'Aa31sc142G70' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.5396' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.5403' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.2831' => 'aag', 'Actinidia16870' => 'ach', 'Actinidia17919' => 'ach', 'Actinidia30468' => 'ach', 'Actinidia35513' => 'ach', 'Actinidia38124' => 'ach', 'Actinidia39320' => 'ach', 'Ah.02g112490' => 'amhyb', 'Ah.02g112500' => 'amhyb', 'Ah.04g156100' => 'amhyb', 'Ah.06g196110' => 'amhyb', 'Ah.07g201460' => 'amhyb', 'Ah.13g077260' => 'amhyb', 'Ah.13g077270' => 'amhyb', 'Ah.13g077280' => 'amhyb', 'Ah.15g091230' => 'amhyb', 'AL1G12040' => 'aly', 'AL2G23470' => 'aly', 'AL2G23480' => 'aly', 'AL3G24070' => 'aly', 'AL3G24080' => 'aly', 'AL3G24090' => 'aly', 'AL3G24100' => 'aly', 'AL3G53960' => 'aly', 'AL4G27870' => 'aly', 'AL4G32200' => 'aly', 'Aqoxy1G01334' => 'aox', 'Aqoxy2G02675' => 'aox', 'Aqoxy2G02676' => 'aox', 'Aqoxy2G02677' => 'aox', 'Aqoxy2G02678' => 'aox', 'Aqoxy2G02679' => 'aox', 'Aqoxy2G02680' => 'aox', 'Aqoxy2G02682' => 'aox', 'Aqoxy2G02683' => 'aox', 'Aqoxy2G02684' => 'aox', 'Aqoxy2G02686' => 'aox', 'Aqoxy2G02688' => 'aox', 'Aqoxy2G02689' => 'aox', 'Aqoxy3G03479' => 'aox', 'Aqoxy7G03742' => 'aox', 'Aqoxy7G04062' => 'aox', 'arahy.Tifrunner.gnm1.ann1.3SM0CX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5T13S1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BURY2K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DS7W66' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JZYH7X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.R5PY9S' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RM4DFR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.SYJH9Z' => 'arhy', 'AT2G36110' => 'ath', 'AT3G12410' => 'ath', 'AT3G12420' => 'ath', 'AT3G12430' => 'ath', 'AT3G12440' => 'ath', 'AT3G12460' => 'ath', 'AT3G12470' => 'ath', 'AT3G62320' => 'ath', 'AT5G48350' => 'ath', 'ATR0665G251' => 'atr', 'ATR0693G315' => 'atr', 'Atru.chr1.1145' => 'acertr', 'Atru.chr1.1367' => 'acertr', 'Atru.chr1.1368' => 'acertr', 'Atru.chr2.1092' => 'acertr', 'Atru.chr2.1098' => 'acertr', 'Atru.chr2.1104' => 'acertr', 'Atru.chr2.3250' => 'acertr', 'Atru.chr5.961' => 'acertr', 'Atru.chr5.962' => 'acertr', 'AUR62006734' => 'cqu', 'AUR62013576' => 'cqu', 'AUR62018406' => 'cqu', 'AUR62018409' => 'cqu', 'AUR62018411' => 'cqu', 'AUR62021032' => 'cqu', 'AUR62021034' => 'cqu', 'AUR62021037' => 'cqu', 'AUR62024614' => 'cqu', 'AUR62024628' => 'cqu', 'AUR62024629' => 'cqu', 'AUR62026714' => 'cqu', 'AUR62039256' => 'cqu', 'AUR62039257' => 'cqu', 'BcaB03g15796' => 'bca', 'BcaB04g18681' => 'bca', 'BcaB04g21078' => 'bca', 'BcaB04g21079' => 'bca', 'BcaC01g04049' => 'bca', 'BcaC07g40717' => 'bca', 'BcaC07g42744' => 'bca', 'BcaC07g42747' => 'bca', 'BcaC08g45191' => 'bca', 'BcaC08g45192' => 'bca', 'BcaC09g48236' => 'bca', 'BcaC09g48241' => 'bca', 'BcaC09g48242' => 'bca', 'BcaC09g48243' => 'bca', 'BolC1t05214H' => 'bol', 'BolC1t05215H' => 'bol', 'BolC1t05216H' => 'bol', 'BolC1t05224H' => 'bol', 'BolC5t28920H' => 'bol', 'BolC6t37986H' => 'bol', 'BolC8t51297H' => 'bol', 'BraA09t40844Z' => 'bra', 'BraA10t42416Z' => 'bra', 'C01p52770' => 'bna', 'C01p52780' => 'bna', 'C01p52870' => 'bna', 'C05p01380' => 'bna', 'C06p28200' => 'bna', 'C08p37200' => 'bna', 'CAN.G1058.27' => 'can', 'CAN.G1076.27' => 'can', 'CAN.G1076.28' => 'can', 'CAN.G1227.17' => 'can', 'CAN.G208.12' => 'can', 'CAN.G220.15' => 'can', 'CAN.G220.18' => 'can', 'CAN.G220.19' => 'can', 'CAN.G220.20' => 'can', 'CAN.G220.21' => 'can', 'CAN.G220.22' => 'can', 'CAN.G4487.1' => 'can', 'CAN.G708.6' => 'can', 'CAN.G723.34' => 'can', 'CAN.G809.11' => 'can', 'CAN.G809.12' => 'can', 'CAN.G855.10' => 'can', 'CAN.G959.15' => 'can', 'CANSAT25G0076' => 'cansat', 'CANSAT56G2559' => 'cansat', 'CANSAT56G3075' => 'cansat', 'CANSAT56G3317' => 'cansat', 'CARHR086940' => 'chi', 'CARHR086950' => 'chi', 'CARHR086960' => 'chi', 'CARHR086970' => 'chi', 'CARHR130350' => 'chi', 'CARHR241110' => 'chi', 'Carub.0001s0176' => 'cru', 'Carub.0003s1177' => 'cru', 'Carub.0003s1178' => 'cru', 'Carub.0003s1179' => 'cru', 'Carub.0003s1180' => 'cru', 'Carub.0003s3542' => 'cru', 'Carub.0004s1785' => 'cru', 'Carub.0004s1787' => 'cru', 'Carub.0006s2416' => 'cru', 'Ca_00965_v3' => 'car', 'Ca_00966_v3' => 'car', 'Ca_00967_v3' => 'car', 'Ca_09162_v3' => 'car', 'Ca_09164_v3' => 'car', 'Ca_09165_v3' => 'car', 'Ca_10270_v3' => 'car', 'Ca_10271_v3' => 'car', 'CBR_g26360' => 'cbr', 'Cc00_g29270' => 'ccan', 'Cc06_g20650' => 'ccan', 'CDE01G0758' => 'cde', 'CDE02G3341' => 'cde', 'CDE12G0610' => 'cde', 'CDE12G0614' => 'cde', 'CDE12G0818' => 'cde', 'Cfa005760' => 'cfa', 'Cfa007333' => 'cfa', 'Cfa016272' => 'cfa', 'Cfa016273' => 'cfa', 'Cfa016274' => 'cfa', 'Cfa020108' => 'cfa', 'Cfa020109' => 'cfa', 'Ciclev10006543m.g' => 'ccl', 'Ciclev10007117m.g' => 'ccl', 'Ciclev10012328m.g' => 'ccl', 'Ciclev10012747m.g' => 'ccl', 'Ciclev10023267m.g' => 'ccl', 'CiPaw.01G083200' => 'cil', 'CiPaw.01G136400' => 'cil', 'CiPaw.04G030000' => 'cil', 'CiPaw.08G087400' => 'cil', 'CiPaw.09G051600' => 'cil', 'CiPaw.15G108300' => 'cil', 'ClCG10G016290' => 'cla', 'ClCG10G016300' => 'cla', 'COL.COLO4_03543' => 'col', 'COL.COLO4_15525' => 'col', 'COL.COLO4_23199' => 'col', 'COL.COLO4_23200' => 'col', 'Cpa.g.sc167.14' => 'cpa', 'Cpa.g.sc18.86' => 'cpa', 'Cpa.g.sc516.2' => 'cpa', 'Cpa.g.sc9.30' => 'cpa', 'Cre01.g020182' => 'cre', 'Cre02.g101900' => 'cre', 'Cre05.g241638' => 'cre', 'CsaV3_3G040030' => 'csa', 'CsaV3_3G040040' => 'csa', 'CsaV3_3G040060' => 'csa', 'CSS0004464' => 'camsi', 'CSS0029635' => 'camsi', 'CSS0042968' => 'camsi', 'CSS0049935' => 'camsi', 'DCAR_012330' => 'dca', 'DCAR_013532' => 'dca', 'DCAR_030457' => 'dca', 'Dinv02243' => 'din', 'Dinv03154' => 'din', 'Dinv03445' => 'din', 'Dinv04815' => 'din', 'Dinv04816' => 'din', 'Dinv09707' => 'din', 'Dinv12028' => 'din', 'Dinv17692' => 'din', 'Dinv24473' => 'din', 'Dinv30289' => 'din', 'Dinv30291' => 'din', 'Dinv30903' => 'din', 'Dinv34313' => 'din', 'Duzib052G0110' => 'dzi', 'Duzib128G1006' => 'dzi', 'Duzib133G0981' => 'dzi', 'Duzib138G1961' => 'dzi', 'Duzib151G0423' => 'dzi', 'ECA232G0102' => 'eca', 'ECA232G0318' => 'eca', 'ECA232G0479' => 'eca', 'ECA232G1837' => 'eca', 'ECA232G4885' => 'eca', 'ECA233G4844' => 'eca', 'ECA234G2044' => 'eca', 'ECA234G2512' => 'eca', 'ECA236G1845' => 'eca', 'EL10Ac3g07294' => 'bvu', 'EL10Ac3g07297' => 'bvu', 'EL10Ac3g07298' => 'bvu', 'EL10Ac4g09474' => 'bvu', 'EL10As5g23567' => 'bvu', 'Eucgr.B03763' => 'egr', 'Eucgr.C04094' => 'egr', 'Eucgr.D02516' => 'egr', 'Eucgr.D02522' => 'egr', 'Eucgr.G02149' => 'egr', 'Eucgr.J00899' => 'egr', 'Eucgr.K01677' => 'egr', 'FAN11G0335' => 'fan', 'FAN11G2385' => 'fan', 'FAN11G3456' => 'fan', 'FAN16G2738' => 'fan', 'FAN19G1124' => 'fan', 'FAN21G0926' => 'fan', 'FAN23G2261' => 'fan', 'FAN25G0223' => 'fan', 'FAN26G0260' => 'fan', 'FAN26G1429' => 'fan', 'FvH4_1g07360' => 'fve', 'FvH4_3g05762' => 'fve', 'FvH4_3g21850' => 'fve', 'FvH4_3g40510' => 'fve', 'Glyma.07G143200' => 'gma', 'Glyma.07G143700' => 'gma', 'Glyma.09G033900' => 'gma', 'Glyma.12G144600' => 'gma', 'Glyma.15G138600' => 'gma', 'Glyma.18G194300' => 'gma', 'Glyma.18G194400' => 'gma', 'Glyma.18G194500' => 'gma', 'Gohir.A02G055600' => 'ghi', 'Gohir.A07G129450' => 'ghi', 'Gohir.A11G245100' => 'ghi', 'Gohir.D02G060600' => 'ghi', 'Gohir.D07G133800' => 'ghi', 'Gorai.001G145100' => 'gra', 'Gorai.005G068300' => 'gra', 'GSVIVG01025807001' => 'vvi', 'HanXRQChr09g0238531' => 'han', 'HanXRQChr09g0253651' => 'han', 'HanXRQChr09g0255181' => 'han', 'HanXRQChr15g0495481' => 'han', 'HanXRQChr15g0495491' => 'han', 'HanXRQChr15g0495501' => 'han', 'HanXRQChr15g0495511' => 'han', 'HanXRQChr16g0528461' => 'han', 'Haze_00024' => 'cav', 'Haze_07614' => 'cav', 'Haze_16441' => 'cav', 'Haze_20065' => 'cav', 'Haze_20069' => 'cav', 'Haze_20280' => 'cav', 'Haze_20285' => 'cav', 'Hma1.2p1_0078F.1_g039890' => 'hma', 'Hma1.2p1_0662F.1_g198230' => 'hma', 'Hma1.2p1_1283F.1_g272790' => 'hma', 'Hma1.2p1_1843F.1_g305030' => 'hma', 'HPP92_008929' => 'vpl', 'Lalb_Chr01g0016721' => 'lal', 'Lalb_Chr03g0042881' => 'lal', 'Lj1g0006752' => 'lja', 'Lj1g0021355' => 'lja', 'Lj1g0022508' => 'lja', 'Lj1g0026528' => 'lja', 'Lj1g0028206' => 'lja', 'Lj1P1081T21' => 'lonja', 'Lj2A411T32' => 'lonja', 'Lj2g0021922' => 'lja', 'Lj3g0008510' => 'lja', 'Lj3P844T47' => 'lonja', 'Lj4C788G2' => 'lonja', 'Lj4C788T5' => 'lonja', 'Lj4g0026929' => 'lja', 'Lj5g0012682' => 'lja', 'Lj5P282T58' => 'lonja', 'Lj6g0001850' => 'lja', 'Lj6g0004950' => 'lja', 'Lj6g0006729' => 'lja', 'Lj6g0009916' => 'lja', 'Lj6P561T19' => 'lonja', 'Lj6P693T55' => 'lonja', 'Lj8A26T46' => 'lonja', 'Lj8P110T28' => 'lonja', 'Lsat_1_v5_gn_4_20821' => 'lsa', 'Lsat_1_v5_gn_4_21321' => 'lsa', 'Lsat_1_v5_gn_5_111240' => 'lsa', 'Lsat_1_v5_gn_5_111280' => 'lsa', 'Lsat_1_v5_gn_5_161560' => 'lsa', 'Lsat_1_v5_gn_5_161580' => 'lsa', 'Lsat_1_v5_gn_6_26800' => 'lsa', 'Lsat_1_v5_gn_6_27021' => 'lsa', 'Lsat_1_v5_gn_9_55720' => 'lsa', 'Lsat_1_v5_gn_9_55760' => 'lsa', 'Lsat_1_v5_gn_9_55780' => 'lsa', 'Lsat_1_v5_gn_9_55800' => 'lsa', 'Lsat_1_v5_gn_9_55820' => 'lsa', 'Manes.03G206700' => 'mes', 'Manes.08G161704' => 'mes', 'Manes.08G161900' => 'mes', 'Manes.11G141300' => 'mes', 'Manes.15G001700' => 'mes', 'Mapoly0001s0405' => 'mpo', 'MBI03_g28537_MAGBIO' => 'mbi', 'MBI18_g35538_MAGBIO' => 'mbi', 'MBI18_g35542_MAGBIO' => 'mbi', 'MCO03G397' => 'mco', 'MD03G1253300' => 'mdo', 'MD09G1279200' => 'mdo', 'MD12G1053400' => 'mdo', 'MD13G1028400' => 'mdo', 'MD14G1051900' => 'mdo', 'MELO3C009746.2' => 'cme', 'MELO3C025289.2' => 'cme', 'Migut.A01095' => 'egut', 'Migut.E01003' => 'egut', 'Migut.E01004' => 'egut', 'Migut.E01005' => 'egut', 'Migut.E01039' => 'egut', 'Migut.E01040' => 'egut', 'Migut.E01697' => 'egut', 'Migut.E01699' => 'egut', 'Migut.G00751' => 'egut', 'Migut.G00763' => 'egut', 'Migut.H01133' => 'egut', 'Migut.I00460' => 'egut', 'Migut.J00921' => 'egut', 'Migut.J00957' => 'egut', 'Migut.J01133' => 'egut', 'Migut.J01134' => 'egut', 'Migut.J01613' => 'egut', 'Migut.J01614' => 'egut', 'Migut.K00157' => 'egut', 'Migut.K00159' => 'egut', 'Migut.N00797' => 'egut', 'Migut.N00933' => 'egut', 'Migut.O00481' => 'egut', 'Migut.O00534' => 'egut', 'Migut.O00604' => 'egut', 'Migut.O00662' => 'egut', 'MSTRG.19777' => 'ama', 'Nitab4.5_0000296g0050' => 'nta', 'Nitab4.5_0000312g0010' => 'nta', 'Nitab4.5_0000315g0250' => 'nta', 'Nitab4.5_0000642g0270' => 'nta', 'Nitab4.5_0000699g0130' => 'nta', 'Nitab4.5_0000712g0170' => 'nta', 'Nitab4.5_0000712g0220' => 'nta', 'Nitab4.5_0000787g0060' => 'nta', 'Nitab4.5_0001338g0050' => 'nta', 'Nitab4.5_0001338g0080' => 'nta', 'Nitab4.5_0002225g0060' => 'nta', 'Nitab4.5_0002225g0070' => 'nta', 'Nitab4.5_0003544g0020' => 'nta', 'Nitab4.5_0003694g0040' => 'nta', 'Nitab4.5_0004310g0010' => 'nta', 'Nitab4.5_0004382g0010' => 'nta', 'Nitab4.5_0004525g0050' => 'nta', 'Nitab4.5_0005169g0020' => 'nta', 'Nitab4.5_0006171g0080' => 'nta', 'Nitab4.5_0007799g0100' => 'nta', 'Nitab4.5_0011877g0020' => 'nta', 'Nitab4.5_0014313g0010' => 'nta', 'Nn1g08089' => 'nnu', 'Nn1g08090' => 'nnu', 'Nn1g08098' => 'nnu', 'Nn2g14323' => 'nnu', 'Nn3g21760' => 'nnu', 'Nn3g21761' => 'nnu', 'Nn4g25539' => 'nnu', 'Nn4g25540' => 'nnu', 'Nn4g25541' => 'nnu', 'Nn4g25542' => 'nnu', 'Nn7g36495' => 'nnu', 'Nn7g38225' => 'nnu', 'Nn8g39916' => 'nnu', 'Oeu038041.1' => 'oeu', 'Oeu038042.1' => 'oeu', 'Oeu038044.1' => 'oeu', 'Oeu053737.1' => 'oeu', 'Oeu060771.1' => 'oeu', 'Oeu060772.1' => 'oeu', 'Oeu064750.1' => 'oeu', 'Oeu064751.1' => 'oeu', 'Oeu064752.1' => 'oeu', 'Oeu064753.1' => 'oeu', 'Os01g0299700' => 'osa', 'Os01g0300000' => 'osa', 'Os01g0660500' => 'osa', 'Os01g0660800' => 'osa', 'Os01g0737600' => 'osa', 'Os01g0737700' => 'osa', 'Os04g0225100' => 'osa', 'Os07g0112300' => 'osa', 'Os07g0112400' => 'osa', 'Os11g0222320' => 'osa', 'Peaxi162Scf00011g01434' => 'pax', 'Peaxi162Scf00016g00923' => 'pax', 'Peaxi162Scf00069g00011' => 'pax', 'Peaxi162Scf00102g00087' => 'pax', 'Peaxi162Scf00102g00843' => 'pax', 'Peaxi162Scf00102g01072' => 'pax', 'Peaxi162Scf00125g00026' => 'pax', 'Peaxi162Scf00160g01028' => 'pax', 'Peaxi162Scf00174g00119' => 'pax', 'Peaxi162Scf00174g00122' => 'pax', 'Peaxi162Scf00258g00126' => 'pax', 'Peaxi162Scf00357g00083' => 'pax', 'Peaxi162Scf00357g00084' => 'pax', 'Peaxi162Scf00357g00085' => 'pax', 'Peaxi162Scf00357g00086' => 'pax', 'Peaxi162Scf00451g00610' => 'pax', 'Peaxi162Scf00462g00085' => 'pax', 'Peaxi162Scf00563g00310' => 'pax', 'Peaxi162Scf00626g00062' => 'pax', 'Peaxi162Scf00877g00007' => 'pax', 'Peaxi162Scf00877g00111' => 'pax', 'Peaxi162Scf00975g00016' => 'pax', 'Peaxi162Scf00975g10015' => 'pax', 'Peaxi162Scf00991g00003' => 'pax', 'Peaxi162Scf01061g00003' => 'pax', 'PGR004G0208' => 'pgr', 'PGR031G3354' => 'pgr', 'PGR042G0319' => 'pgr', 'PGR083G1422' => 'pgr', 'PGR083G1689' => 'pgr', 'PGR083G2382' => 'pgr', 'PGR142G4357' => 'pgr', 'PGSC0003DMG400006389' => 'stu', 'PGSC0003DMG400012475' => 'stu', 'PGSC0003DMG400012504' => 'stu', 'PGSC0003DMG400014043' => 'stu', 'PGSC0003DMG400024888' => 'stu', 'PGSC0003DMG400029410' => 'stu', 'PGSC0003DMG400037105' => 'stu', 'PGSC0003DMG400042198' => 'stu', 'PGSC0003DMG400043401' => 'stu', 'PGSC0003DMG400043674' => 'stu', 'Phvul.002G068500' => 'pvu', 'Phvul.006G119400' => 'pvu', 'Phvul.006G119500' => 'pvu', 'Phvul.006G119600' => 'pvu', 'Phvul.007G212800' => 'pvu', 'Phvul.008G109700' => 'pvu', 'Phvul.008G109900' => 'pvu', 'Phvul.008G111200' => 'pvu', 'Potri.006G031400' => 'ptr', 'Potri.011G116000' => 'ptr', 'Potri.013G049000' => 'ptr', 'Potri.016G028700' => 'ptr', 'Pp3c16_24370' => 'ppa', 'Pp3c2_23990' => 'ppa', 'Prupe.3G008200' => 'ppe', 'Prupe.4G179100' => 'ppe', 'Prupe.7G019000' => 'ppe', 'Psat0s4525g0040' => 'psa', 'Psat1g162320' => 'psa', 'Psat3g135080' => 'psa', 'Psat3g135440' => 'psa', 'Psat3g135480' => 'psa', 'Psat6g160280' => 'psa', 'PSO017G0226' => 'pso', 'PSO017G0537' => 'pso', 'PSO017G2927' => 'pso', 'PSO017G2955' => 'pso', 'PSO017G3305' => 'pso', 'PSO017G3641' => 'pso', 'PSO017G4162' => 'pso', 'PSO017G6831' => 'pso', 'PSO063G4041' => 'pso', 'PSO063G4532' => 'pso', 'PSO210G1382' => 'pso', 'PSO210G1417' => 'pso', 'PSO210G1723' => 'pso', 'PSO210G2292' => 'pso', 'PSO210G3345' => 'pso', 'PSO302G0060' => 'pso', 'PSO384G3136' => 'pso', 'PSO384G3762' => 'pso', 'PSO478G2437' => 'pso', 'PSO478G3537' => 'pso', 'PSO478G5270' => 'pso', 'PSO532G0038' => 'pso', 'PSO532G0047' => 'pso', 'PSO541G1163' => 'pso', 'PSO541G1650' => 'pso', 'PSO541G3667' => 'pso', 'PSO541G3748' => 'pso', 'PSO541G4261' => 'pso', 'PSO541G5105' => 'pso', 'PSO541G5168' => 'pso', 'PSO541G5307' => 'pso', 'PSO675G0235' => 'pso', 'PSO675G6200' => 'pso', 'PSO761G0004' => 'pso', 'PSO781G0111' => 'pso', 'PSO781G0173' => 'pso', 'PSO781G0239' => 'pso', 'PSO782G0468' => 'pso', 'PSO782G3268' => 'pso', 'PSO782G4610' => 'pso', 'QL02p062614' => 'qlo', 'QL02p073879' => 'qlo', 'QL07p013665' => 'qlo', 'QL10p006297' => 'qlo', 'RcHm_v2.0_Chr5g0013771' => 'rch', 'RcHm_v2.0_Chr5g0073181' => 'rch', 'Rhsim04G0069600' => 'rsi', 'Rhsim04G0069800' => 'rsi', 'Rhsim04G0069900' => 'rsi', 'Rhsim04G0117500' => 'rsi', 'Rhsim04G0117600' => 'rsi', 'Rhsim04G0240800' => 'rsi', 'Rhsim04G0240900' => 'rsi', 'Rhsim04G0241000' => 'rsi', 'Rhsim06G0095500' => 'rsi', 'Rhsim13G0003000' => 'rsi', 'Sabra06G0021000' => 'sbr', 'Sabra13G0045300' => 'sbr', 'SalBow1G2078' => 'sbo', 'SalBow2G0211' => 'sbo', 'SalBow3G0713' => 'sbo', 'SalBow6G0974' => 'sbo', 'SalBow6G2700' => 'sbo', 'SalBow6G4799' => 'sbo', 'SalBow6G6665' => 'sbo', 'SalBow6G7074' => 'sbo', 'Sc25g0005490' => 'sci', 'Sc25g0005550' => 'sci', 'Sed0011417' => 'sed', 'Sed0018455' => 'sed', 'SEGI_23564' => 'sgi', 'SGA_v2.0_scaffold1027G53798' => 'sas', 'SGA_v2.0_scaffold189G40373' => 'sas', 'SGA_v2.0_scaffold198G41114' => 'sas', 'SGA_v2.0_scaffold240G44131' => 'sas', 'SGA_v2.0_scaffold37G14598' => 'sas', 'SGA_v2.0_scaffold66G22305' => 'sas', 'SGA_v2.0_scaffold66G22468' => 'sas', 'SGA_v2.0_scaffold69G23180' => 'sas', 'SGA_v2.0_scaffold73G24395' => 'sas', 'SMO230G0079' => 'smo', 'Solyc01g100670.1' => 'sly', 'Solyc01g100680.1' => 'sly', 'Solyc01g103460.2' => 'sly', 'Solyc08g007350.2' => 'sly', 'Solyc08g078620.1' => 'sly', 'Solyc10g078200.1' => 'sly', 'Solyc11g006480.1' => 'sly', 'Solyc12g042390.1' => 'sly', 'Solyc12g094540.1' => 'sly', 'Sopen00g013300' => 'spe', 'Sopen01g044180' => 'spe', 'Sopen01g045820' => 'spe', 'Sopen04g030580' => 'spe', 'Sopen08g003290' => 'spe', 'Sopen08g027100' => 'spe', 'Sopen10g028880' => 'spe', 'Sopen11g002370' => 'spe', 'Sopen12g021370' => 'spe', 'Sopen12g031440' => 'spe', 'Sp3g10600' => 'spa', 'Sp4g18350' => 'spa', 'Sp5g01070' => 'spa', 'Sp7g04890' => 'spa', 'TAR362G0630' => 'tar', 'TAR362G0877' => 'tar', 'TAR365G0209' => 'tar', 'TAR374G0369' => 'tar', 'TAR374G1684' => 'tar', 'TAR623G0229' => 'tar', 'TAR623G1218' => 'tar', 'TAR623G1595' => 'tar', 'TAR623G1664' => 'tar', 'TAR628G0037' => 'tar', 'TAR628G1520' => 'tar', 'TAR636G1498' => 'tar', 'TAR636G3206' => 'tar', 'THA.LOC104821485' => 'tha', 'THA.LOC104821486' => 'tha', 'THA.LOC104827360' => 'tha', 'Thecc.01G317100' => 'tca', 'Thecc.01G317200' => 'tca', 'Thecc.01G317300' => 'tca', 'Thecc.04G304300' => 'tca', 'Thhalv10001867m.g' => 'esa', 'Thhalv10006447m.g' => 'esa', 'Thhalv10009718m.g' => 'esa', 'Thhalv10017696m.g' => 'esa', 'Thhalv10021493m.g' => 'esa', 'Thhalv10022087m.g' => 'esa', 'Thhalv10022181m.g' => 'esa', 'Thhalv10024031m.g' => 'esa', 'Thhalv10028101m.g' => 'esa', 'Thhalv10028212m.g' => 'esa', 'Thhalv10028324m.g' => 'esa', 'TPR.G10171' => 'tpr', 'TPR.G1540' => 'tpr', 'TPR.G1559' => 'tpr', 'TPR.G1581' => 'tpr', 'TPR.G1588' => 'tpr', 'TPR.G26548' => 'tpr', 'TPR.G28955' => 'tpr', 'TPR.G31753' => 'tpr', 'TPR.G31756' => 'tpr', 'TPR.G33857' => 'tpr', 'TPR.G33897' => 'tpr', 'TPR.G38597' => 'tpr', 'TPR.G38682' => 'tpr', 'TPR.G39393' => 'tpr', 'TPR.G40213' => 'tpr', 'TWI18G0454' => 'twi', 'TWI36G0422' => 'twi', 'TWI53G0058' => 'twi', 'TWI53G0597' => 'twi', 'TWI53G1169' => 'twi', 'TWI74G0285' => 'twi', 'TWI74G0322' => 'twi', 'vmacro07945' => 'vma', 'vmacro08978' => 'vma', 'VMungo0464G0812' => 'vmu', 'VMungo0540G1584' => 'vmu', 'VMungo0540G1700' => 'vmu', 'VMungo0540G2093' => 'vmu', 'VMungo0647G0937' => 'vmu', 'VMungo0647G2538' => 'vmu', 'Zm00001eb153910' => 'zma', 'Zm00001eb156970' => 'zma', 'Zm00001eb157800' => 'zma', 'Zm00001eb298500' => 'zma', 'Zm00001eb340390' => 'zma', 'Zm00001eb359560' => 'zma' ) $gf_id = 'HOM05D000886' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000886' ) $data_identifier = 'HOM05D000886' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 8, 'aar' => (int) 3, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 9, 'aly' => (int) 10, 'aox' => (int) 16, 'arhy' => (int) 8, 'ath' => (int) 9, 'atr' => (int) 2, 'acertr' => (int) 9, 'cqu' => (int) 14, 'bca' => (int) 14, 'bol' => (int) 7, 'bra' => (int) 2, 'can' => (int) 18, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 9, 'car' => (int) 8, 'cbr' => (int) 1, 'ccan' => (int) 2, 'cde' => (int) 5, 'cfa' => (int) 7, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 2, 'col' => (int) 4, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 3, 'camsi' => (int) 4, 'dca' => (int) 3, 'din' => (int) 13, 'dzi' => (int) 5, 'eca' => (int) 9, 'bvu' => (int) 5, 'egr' => (int) 7, 'fan' => (int) 10, 'fve' => (int) 4, 'gma' => (int) 8, 'ghi' => (int) 5, 'gra' => (int) 2, 'vvi' => (int) 1, 'han' => (int) 8, 'cav' => (int) 7, 'hma' => (int) 4, 'vpl' => (int) 1, 'lal' => (int) 2, 'lja' => (int) 13, 'lonja' => (int) 10, 'lsa' => (int) 13, 'mes' => (int) 5, 'mpo' => (int) 1, 'mbi' => (int) 3, 'mco' => (int) 1, 'mdo' => (int) 5, 'cme' => (int) 2, 'egut' => (int) 26, 'ama' => (int) 1, 'nta' => (int) 22, 'nnu' => (int) 13, 'oeu' => (int) 10, 'osa' => (int) 10, 'pax' => (int) 25, 'pgr' => (int) 7, 'stu' => (int) 10, 'pvu' => (int) 8, 'ptr' => (int) 4, 'ppa' => (int) 2, 'ppe' => (int) 3, 'psa' => (int) 6, 'pso' => (int) 40, 'qlo' => (int) 4, 'rch' => (int) 2, 'rsi' => (int) 10, 'sbr' => (int) 2, 'sbo' => (int) 8, 'sci' => (int) 2, 'sed' => (int) 2, 'sgi' => (int) 1, 'sas' => (int) 9, 'smo' => (int) 1, 'sly' => (int) 9, 'spe' => (int) 10, 'spa' => (int) 4, 'tar' => (int) 13, 'tha' => (int) 3, 'tca' => (int) 4, 'esa' => (int) 11, 'tpr' => (int) 15, 'twi' => (int) 7, 'vma' => (int) 2, 'vmu' => (int) 6, 'zma' => (int) 6 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb359560' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1